Useful tools & online resources
Bioinformatics toolsBAR - Bio-analytic resource for Plant Biology
eFP Mangosteen MapMan Synthetic Biology Weigel's lab - amiRNAs Venn Analysis OrthoVenn OrthoFinder ClusVis PCAGO ShinyHeatmap Fasta toolbox Gene Calc ShinyGO KEGG Mapper Pathview Bioicons Skylign Tools
List Omictools Seqkit micca - MICrobial Community Analysis Bioinformatics and Genome Analyses Courses SAM/BAM manipulation variant calling |
NGS data analysisComputing
Galaxy CyVerse DDBJ Read Annotation Pipeline Transcriptomics Analysis Trinity Tuxedo iDEP RNASeqBrowser eFP-Seq Browser iTAK Network Analysis StringDB Learning Resources Data Analysis in Genome Biology The Gene School EMBO Practical Courses UC Davis Bioinformatics Training Program Trinity and Tuxedo RNA-Seq Workshop Canadian Bioinformatics Workshops Australian BioCommons (vids) MSU Slideshare Openlearning - Omics Analysis Openlearning - Transcriptomics Bioinfbook R Circos Other useful links |
Proteomics
MaxQuant - MQSS learning vids Perseus ProVision Trans-Proteomic Pipeline (TPP) Structural Biology AlphaFold2 - ColabFold RoseTTAFold PredictProtein UCSF ChimeraX FirstGlance in Jmol Molecular Simulation MDWeb VLS3D CABS-dock CABS-flex |
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