Thanks for Participating in our workshop!!!
Advanced Transcriptomics: Concept & Practice
"A simple & easy approach to downstream RNA-seq analysis for publication"
This workshop will focus on topics ranging from basic experimental design to advanced downstream analyses of RNA-seq data as well as tips to publish in high-impact journals.
Hands-on training from RNA-seq data to publication figures / tables without UNIX / Python / R scripts.
Upon the completion of this 3-day online workshop, participants will be capable of the following:
Hands-on training from RNA-seq data to publication figures / tables without UNIX / Python / R scripts.
Upon the completion of this 3-day online workshop, participants will be capable of the following:
- Conceptualising a transcriptome experiment with different considerations
- Understanding a complete workflow of RNA-seq data acquisition, processing, assembly, functional annotation, analysis, and interpretation
- Aware of the different analysis workflows and software packages in RNA-seq analysis
- Competent in submitting RNA-seq related files to the NCBI public repository
- Exposure to different approaches for integrating transcriptomics with other omics towards systems understanding
- Network opportunity with other researchers in the field & sharing of knowledge via voluntary flash talks
- Hands-on in de novo transcriptomic analysis and mining RNA-seq data
- Hands-on in downstream functional analyses: WEGO, KEGG pathway, clustering, functional enrichment
Workshop Highlights
- Principles of transcriptomics
- Experimental design & considerations
- Complete workflow of transcriptomic analysis
- Functional annotation & enrichment analysis
- Biologist-friendly approach to downstream analyses using MS Excel & Perseus
- Data submission to NCBI public repository
- Tips for publishing transcriptomics journal article
- Workshop materials & video recordings will be available for access after the workshop
- Global participants
- Certificate of participation
Why should YOU attend?
- You're a researcher, academician, or student interested in transcriptomics and its applications.
- You're interested in advanced skills in RNA-seq analysis.
- You want user-friendly platforms for the interpretation of RNA-seq data.
- You got the transcriptome results from the sequencing vendor but not sure how to interpret them.
- You wish to analyse the transcriptome data hands-on, especially as a biologist instead of a data scientist.
- You want to learn on how to mine for biological knowledge from transcriptome data without programming/coding.
- You work on a transcriptomic project and want to learn on how to publish your results as a high-impact journal article.
This workshop is opened to local & international participants, from beginner to advanced researchers in molecular biology / omics. The content of this workshop is transferable to other omics studies such as proteomics.
Fee: only MYR300 (local) / USD80 (for international participants)
Group registration (3 pax): RM800 (local) / USD200 (international)
Deadline: 4 July 2022 12pm GMT+8 with full payment/PO
Venue: Online
Duration: 5-7 July 2022 (0900-1700 GMT+8)
Trainer: Assoc. Prof. Dr. Hoe-Han Goh
Group registration (3 pax): RM800 (local) / USD200 (international)
Deadline: 4 July 2022 12pm GMT+8 with full payment/PO
Venue: Online
Duration: 5-7 July 2022 (0900-1700 GMT+8)
Trainer: Assoc. Prof. Dr. Hoe-Han Goh
Tentative Programme
Programme is subjected to change.
Requirements
For this online workshop, please download and install Webex for the online sessions. You won't need a computer with very high specifications. Minimum requirements: Windows OS (ideally 64-bit Windows 10 and above) with minimum 2 GB RAM and 10 GB hard disk storage to run MS Excel (2016 and above) and Perseus software for day 2 and day 3 practicals, respectively. For Mac users, please run Windows via Parallels or Bootcamp etc.
We will be using Perseus v1.6.7. Installers can be downloaded here. You just need to unzip the Perseus folder.
It's recommended that you use two devices (e.g., desktop/smartphone + laptop) or dual monitor setup to allow easy following of online demos during practicals.
For hands-on practicals, make sure that all software (Excel & Perseus) can run on your laptop before the workshop. Due to time constraint we don't have the time to individually troubleshoot software installation. As a pre-workshop training, you can try out this tutorial with the demo dataset to get familiar with Perseus basic functions. You can refer to Perseus demo videos Part 1 & Part 2.
Don't worry if your laptop cannot run Perseus, you can still learn a lot from this workshop on transcriptomics, different technologies, analysis workflow, applications, data interpretation, and visualisation.
You can email me if facing any difficulty, I will try my best to help.
We will be using Perseus v1.6.7. Installers can be downloaded here. You just need to unzip the Perseus folder.
It's recommended that you use two devices (e.g., desktop/smartphone + laptop) or dual monitor setup to allow easy following of online demos during practicals.
For hands-on practicals, make sure that all software (Excel & Perseus) can run on your laptop before the workshop. Due to time constraint we don't have the time to individually troubleshoot software installation. As a pre-workshop training, you can try out this tutorial with the demo dataset to get familiar with Perseus basic functions. You can refer to Perseus demo videos Part 1 & Part 2.
Don't worry if your laptop cannot run Perseus, you can still learn a lot from this workshop on transcriptomics, different technologies, analysis workflow, applications, data interpretation, and visualisation.
You can email me if facing any difficulty, I will try my best to help.
Further details
*Limited seat. Priority will be given to those who made payment before 30th Jun 2022.
All participants will receive an e-certificate of participation.
All participants will receive an e-certificate of participation.
Organised by
Sponsors
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Trainer's credentials
- An experienced instructor (>10 years) supported by competent team members that successfully organised various omics workshops, seminars & conferences.
- Good track record of transcriptomics publications in reputable journals as a corresponding author.
- The inclusion of technical talks from principals / specialists of companies offering NGS services enhances the workshop content.
- Interactive flash talks during the workshop provide opportunity for participant networking & to obtain feedbacks.
Previous workshops
- Virtual RT-qPCR Analysis Workshop (organiser) 19 Oct 2020
- MAPS Workshop 2019: Proteomics Data Analysis (organiser) 23 Aug 2019
- Shotgun Proteomics Advanced Data Analysis Workshop (organiser) 27-29 Nov 2018
- Transcriptomics Workshop (organiser) 10-12 Apr 2018
- qPCR Workshop (organiser) 21 Mar 2018
- Scientific Workshop on qPCR (organiser) 4 Apr 2017
- Transcriptomics Workshop (organiser) 26-27 May 2015
Feedbacks from the previous workshops
Overall satisfaction: 4.65/5
- Good tips in running data analysis
- Topics covered are more than expected. Good.
- Useful lecture notes, Virtual machine, software
- Enjoyed transcriptomic data analysis part which will be used in my future study
- Useful info on the availability of various tools for downstream processing of bulk RNA-seq
- Enjoyed Unix command, learning to read and write the Unix command for trinity and Trinotate
- The exposure to various bioinformatic tools and their vast applications in transcriptomics is useful
Overall satisfaction: 4.65/5
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